IGVFFI0581SWLH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5213ILTX(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP006_G1_P055_L001_R1

md5sum

647b12380570559e5af70ff8820ea8da

Content MD5sum

49a0c1d2044786b6b40b000d02fc9b1f

File Size

2.0 GB

Submitted File Name

Multiome_ATAC_RP006_G1_L001_P055_S5_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

67035838

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7010YPUF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples