IGVFFI0579JMJP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2109BZLJ(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X036_G2_P035_L003_I1

md5sum

a1a3b601d46899c85d060550cb32b1dc

Content MD5sum

0d6989ddf7f26891a9ebc7b544e2bb36

File Size

1.5 GB

Submitted File Name

Multiome_ATAC_X036_G2_L002_P035_S42_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

200958862

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2877SEAA

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples