IGVFFI0576NQYJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7055SHHA(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP013_G8_P061_L004_I1

md5sum

170260ad91cd7c0f081139e94dd89c4c

Content MD5sum

257ba5e571730cf03433d40885ee7f5d

File Size

411 MB

Submitted File Name

Multiome_ATAC_RP013_G8_L008_P061_S8_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

55842879

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7640TBFV

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 14 more samples