IGVFFI0551RQPI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9809VXKU(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X041_G3_P041_L004_R1

md5sum

322e3289061d65d1b31b44fc1d1ddac1

Content MD5sum

25b57384e53779fe0c7536417a073764

File Size

1.4 GB

Submitted File Name

Multiome_ATAC_X041_G3_L003_P041_S13_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

44775334

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5674WWIP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples