IGVFFI0548CFAB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6783ZBOV(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP009_G8_P057_L004_I1

md5sum

ab7e7cffb2a6311b66e8952aaf1daef2

Content MD5sum

57a0aad741644491a7755f8f06a2c28b

File Size

333 MB

Submitted File Name

Multiome_ATAC_RP009_G8_L008_P057_S16_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

43951100

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9488DNCQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples