IGVFFI0547JQCO

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI0547JQCO/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI0547JQCO",
10    "aliases": [
11        "maya-kasowski:Parse_P2_scRNA_sublibrary3_lane2_R1"
12    ],
13    "assay_titles": [
14        "Parse SPLiT-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v17",
22    "content_md5sum": "9a63f396bc6d287650beb52cf2878052",
23    "content_type": "reads",
24    "controlled_access": true,
25    "creation_timestamp": "2025-03-09T09:48:23.935347+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS0559WMGB/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS0559WMGB",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002631/",
38            "term_name": "single-cell RNA sequencing assay"
39        },
40        "file_set_type": "experimental data",
41        "samples": [
42            {
43                "@id": "/multiplexed-samples/IGVFSM4252CQLW/",
44                "@type": [
45                    "MultiplexedSample",
46                    "Sample",
47                    "Item"
48                ],
49                "accession": "IGVFSM4252CQLW",
50                "classifications": [
51                    "primary cell",
52                    "multiplexed sample"
53                ],
54                "disease_terms": [],
55                "modifications": [],
56                "sample_terms": [
57                    {
58                        "@id": "/sample-terms/UBERON_0002371/",
59                        "status": "released",
60                        "term_name": "bone marrow"
61                    },
62                    {
63                        "@id": "/sample-terms/UBERON_0012168/",
64                        "status": "released",
65                        "term_name": "umbilical cord blood"
66                    }
67                ],
68                "status": "preview",
69                "summary": "multiplexed sample: Homo sapiens bone marrow cell; Homo sapiens umbilical cord blood cell; ... and 12 more samples",
70                "taxa": "Homo sapiens",
71                "treatments": []
72            }
73        ],
74        "status": "preview",
75        "summary": "Parse SPLiT-seq"
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79    "href": "/sequence-files/IGVFFI0547JQCO/@@download/IGVFFI0547JQCO.fastq.gz",
80    "illumina_read_type": "R1",
81    "input_file_for": [],
82    "integrated_in": [],
83    "lab": {
84        "@id": "/labs/maya-kasowski/",
85        "title": "Maya Kasowski, Stanford"
86    },
87    "lane": 2,
88    "loci_list_for": [],
89    "maximum_read_length": 150,
90    "md5sum": "eb24a2fd998f1bbda2b3b92fff7134fd",
91    "mean_read_length": 150,
92    "minimum_read_length": 150,
93    "quality_metrics": [],
94    "read_count": 117634771,
95    "read_names": [
96        "Read 1"
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98    "s3_uri": "s3://igvf-restricted-files/2025/03/09/481c9142-b1c9-44f9-8081-b2ff90f04707/IGVFFI0547JQCO.fastq.gz",
99    "schema_version": "15",
100    "seqspecs": [],
101    "sequencing_kit": "NovaSeq X Series 25B Reagent Kit",
102    "sequencing_platform": {
103        "@id": "/platform-terms/EFO_0022841/",
104        "status": "released",
105        "term_name": "Illumina NovaSeq X Plus"
106    },
107    "sequencing_run": 3,
108    "status": "preview",
109    "submitted_by": {
110        "@id": "/users/2bebcf9d-414f-4058-8d97-00020741a419/",
111        "title": "Shouvik Mani"
112    },
113    "submitted_file_name": "/users/shouvikm/data/Parse/P2/usftp21.novogene.com/01.RawData/P2_SL3/P2_SL3_CKDL230018051-1A_225LMWLT3_L2_1.fq.gz",
114    "summary": "R1 reads from sequencing run 3",
115    "upload_status": "validated",
116    "uuid": "481c9142-b1c9-44f9-8081-b2ff90f04707"
117}