IGVFFI0542LNMH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9071IVDP(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X017_G7_P018_L002_R1

md5sum

32aca6fa0948f42951bda8a70efbf911

Content MD5sum

c8b22669aa12761330f322646b1cced9

File Size

18 GB

Submitted File Name

Multiome_RNA_X017_G7_L007_P018_S15_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7NNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

101

Read Count

275499491

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5586FKRW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples