IGVFFI0542ALSM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2314IHVG(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP002_G6_P051_L008_I1

md5sum

5944272df192dea1b5014e2f988ba538

Content MD5sum

71cb71a21e7fa42935b0695b3a236f5a

File Size

424 MB

Submitted File Name

Multiome_ATAC_RP002_G6_L006_P051_S34_L008_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

63897520

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9681MUTW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples