IGVFFI0539WXHD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6041FJHB(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP014_G7_P061_L002_R3

md5sum

1f259ca150eb8f8d5b4a0c4caf808982

Content MD5sum

cd90d61e999c010402f8b6578b9e8459

File Size

1.9 GB

Submitted File Name

Multiome_ATAC_RP014_G7_L007_P061_S15_L002_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

61835714

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0496VQZI

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples