IGVFFI0516WHRZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0183JRRR(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP007_G2_P055_L001_R3

md5sum

f60c978647b32eed3065fe229f333d21

Content MD5sum

e0648d4906a393d80af7c575c206e6c3

File Size

1.7 GB

Submitted File Name

Multiome_ATAC_RP007_G2_L002_P055_S14_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

57032643

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4037ZUPB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples