{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI0516LTGK/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI0516LTGK",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinB-PCRrep5_I1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released sequence file [IGVFFI0516LTGK](/sequence-files/IGVFFI0516LTGK/) has in progress subobject auxiliary set [IGVFDS1251OECY](/auxiliary-sets/IGVFDS1251OECY/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/sequence-files/IGVFFI0516LTGK/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"content_md5sum": "ca1cc79e88cccdf3f3066e46fc0d849c",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:50:55.514068+00:00",
"file_format": "fastq",
"file_set": "/auxiliary-sets/IGVFDS1251OECY/",
"file_size": 1975282,
"gene_list_for": [],
"href": "/sequence-files/IGVFFI0516LTGK/@@download/IGVFFI0516LTGK.fastq.gz",
"illumina_read_type": "I1",
"index": "GTCTGATG:TGAC",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"loci_list_for": [],
"maximum_read_length": 8,
"md5sum": "a9b333e5f15d51785a10c944ec7f36f6",
"mean_read_length": 8,
"minimum_read_length": 8,
"read_count": 238990,
"release_timestamp": "2023-12-21T01:08:17.471871+00:00",
"s3_uri": "s3://igvf-files/2023/12/13/bdae3fed-5d44-4e8f-b643-76231cf11808/IGVFFI0516LTGK.fastq.gz",
"schema_version": "14",
"seqspecs": [],
"sequencing_platform": "/platform-terms/EFO_0008566/",
"sequencing_run": 1,
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinB-PCRrep5_S305_I1_001.fastq.gz",
"summary": "I1 reads from sequencing run 1",
"upload_status": "validated",
"uuid": "bdae3fed-5d44-4e8f-b643-76231cf11808"
}