IGVFFI0514BKIN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0749RBHU(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X036_G6_P037_L001_R1

md5sum

d262c6e8040c16b93e752865aa1b0678

Content MD5sum

e051a2b9ff50a1d9336760a67049d732

File Size

7.6 GB

Submitted File Name

Multiome_ATAC_X036_G6_L006_P037_S4_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

244517080

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0887BJSQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples