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INDEXED
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SequenceFile
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IGVFFI0512DYNY
IGVFFI0512DYNY
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validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS7588UXOK
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R1 reads from sequencing run 2
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X053_G7_P072_L002_R1
md5sum
035d52248087d7b41f7268b223a1a1d3
Content MD5sum
9cdabf4b87a77bdd3e88b93b13003d84
File Size
16 GB
Submitted File Name
Multiome_RNA_X053_G7_L007_P072_S11_L002_R1_001.fastq.gz
Checkfiles Version
v20
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
2
Flowcell ID
19UBCA4LE
Lane
2
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
151
Read Count
178017001
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2635PZMY
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 83 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 73 years) middle temporal gyrus tissue; ... and 8 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF