IGVFFI0509BOXH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4088CJJR(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X032_G7_P033_L001_R1

md5sum

26e216cbe33089a2cd9f3cea6808389f

Content MD5sum

92a39d630094ca494906d0d4b7d0ec62

File Size

17 GB

Submitted File Name

Multiome_ATAC_X032_G7_L007_P033_S1_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

317283523

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2646IJIB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples