IGVFFI0501ZLKD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1895GMKC(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X024_G1_P023_L003_I1

md5sum

bb35a6ed71158ba9973e96f8ef39ad6a

Content MD5sum

64551310438ed436f0fa823b79e0480c

File Size

2.1 GB

Submitted File Name

Multiome_ATAC_X024_G1_L001_P023_S25_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

287408105

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5984JPVV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples