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IGVFFI0493UWCO

released
validated
File Set
IGVFDS2045SDGW(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R3 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp4_atac_10x1_NGS2_r3
md5sum
89688775e24babfcc2a1f4d7eeab4657
Content MD5sum
a1763c58e5aa031c294f6a38df805be7
File Size
17 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF4_McGinnis/ATAC/FASTQ/_ATAC_1_S5_L004_R3_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
222YV7LT3
Lane
4
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R3
Average Read Length
51
Read Count
570682515

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
5.9 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI9892TFZY, IGVFFI6643NTDT, IGVFFI3769CTHJ, IGVFFI0493UWCO
Ansuman Satpathy, Stanford
1.4 KB
validated