IGVFFI0493MNUD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9153SDXP(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X027_G7_P027_L003_R2

md5sum

bb1d5fd7f62c4929c3f9a554d5f2f19e

Content MD5sum

97bad43786ad6a16cc9d1f610e7ad584

File Size

4.6 GB

Submitted File Name

Multiome_ATAC_X027_G7_L007_P027_S16_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

268598413

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0591JAPP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 71 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples