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IGVFFI0491OLML

released
validated
File Set
IGVFDS6369SLCB(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R3 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp2_atac_10x1_NGS2_r3
md5sum
0adc8fffdebf88d61cced3a7b99c65f1
Content MD5sum
8605921d0132873fcfb9193437ca388a
File Size
16 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF2_McGinnis/ATAC/FASTQ/ATAC_3_S360_L008_R3_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
2257H3LT3
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R3
Average Read Length
50
Read Count
552165744

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) TeloHAEC cell line treated with 10 ng/mL tumor necrosis factor alpha for 4 hours; Homo sapiens (female) TeloHAEC cell line; ... and 7 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.9 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI0491OLML, IGVFFI9291YSSU, IGVFFI2547LRAU, IGVFFI3640SGYN
Ansuman Satpathy, Stanford
1.4 KB
validated