IGVFFI0488AYWZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8878QFCW(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X015_G1_P013_L001_R1

md5sum

94fc5f5a5d40e41681019b344f57f71c

Content MD5sum

81c7760c4114c6ffad9aeddcbf8e3141

File Size

11 GB

Submitted File Name

Multiome_ATAC_X015_G1_L001_P013_S7_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

350563726

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3424EEIT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) posterior cingulate gyrus tissue; Homo sapiens (male, 90 or above years) substantia nigra tissue; ... and 10 more samples