IGVFFI0485FEJO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4030FQTQ(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X017_G1_P015_L003_R2

md5sum

f8c692623f80d8981d4579e1194a8105

Content MD5sum

c42eff9c3e6e08bba923c6469387dec0

File Size

3.4 GB

Submitted File Name

Multiome_ATAC_X017_G1_L001_P015_S23_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

197893374

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4187QNCX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples