IGVFFI0483PXET

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI0483PXET/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI0483PXET",
10    "aliases": [
11        "leif-ludwig:measurement2306820102_scATAC_R2_005"
12    ],
13    "assay_titles": [
14        "10x multiome with scMito-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v17",
22    "content_md5sum": "7701b153fe4c33f4fa36b1fcd0eb5dad",
23    "content_type": "reads",
24    "controlled_access": true,
25    "creation_timestamp": "2025-03-12T21:28:38.987822+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS8004HLTL/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS8004HLTL",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002764/",
38            "term_name": "single-cell ATAC-seq"
39        },
40        "file_set_type": "experimental data",
41        "samples": [
42            {
43                "@id": "/primary-cells/IGVFSM1838ENPX/",
44                "@type": [
45                    "PrimaryCell",
46                    "Biosample",
47                    "Sample",
48                    "Item"
49                ],
50                "accession": "IGVFSM1838ENPX",
51                "classifications": [
52                    "primary cell"
53                ],
54                "sample_terms": [
55                    {
56                        "@id": "/sample-terms/CL_2000001/",
57                        "status": "released",
58                        "term_name": "peripheral blood mononuclear cell"
59                    }
60                ],
61                "status": "preview",
62                "summary": "Homo sapiens (male, 26 years) peripheral blood mononuclear cell",
63                "taxa": "Homo sapiens"
64            }
65        ],
66        "status": "preview",
67        "summary": "10x multiome with scMito-seq"
68    },
69    "file_size": 842778177,
70    "flowcell_id": "22VLC5LT3",
71    "gene_list_for": [],
72    "href": "/sequence-files/IGVFFI0483PXET/@@download/IGVFFI0483PXET.fastq.gz",
73    "illumina_read_type": "R2",
74    "input_file_for": [],
75    "integrated_in": [],
76    "lab": {
77        "@id": "/labs/leif-ludwig/",
78        "title": "Leif Ludwig, MDC"
79    },
80    "lane": 5,
81    "loci_list_for": [],
82    "maximum_read_length": 16,
83    "md5sum": "ae7f023eec480526b94cef54d967cb0f",
84    "mean_read_length": 16,
85    "minimum_read_length": 16,
86    "quality_metrics": [],
87    "read_count": 55390010,
88    "read_names": [
89        "Barcode index"
90    ],
91    "s3_uri": "s3://igvf-restricted-files/2025/03/12/ea261b70-f6b0-45f8-9282-655d71907993/IGVFFI0483PXET.fastq.gz",
92    "schema_version": "15",
93    "seqspecs": [
94        "/configuration-files/IGVFFI9719OTEC/"
95    ],
96    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
97    "sequencing_platform": {
98        "@id": "/platform-terms/EFO_0022841/",
99        "status": "released",
100        "term_name": "Illumina NovaSeq X Plus"
101    },
102    "sequencing_run": 1,
103    "status": "preview",
104    "submitted_by": {
105        "@id": "/users/8164e524-79d5-4407-8a75-c0ea353d28ea/",
106        "title": "Ludwig Lab"
107    },
108    "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2306820102_Multiome_ATAC_S4_L005_R2_001.fastq.gz",
109    "summary": "R2 reads from sequencing run 1",
110    "upload_status": "validated",
111    "uuid": "ea261b70-f6b0-45f8-9282-655d71907993"
112}