IGVFFI0476XCCH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1769TMSZ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP007_G6_P055_L001_R1

md5sum

dac0c9fddebb9715ca09ec02da5cbaf4

Content MD5sum

1a57280f522c9b5c6bdf99f1a615b8bf

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_RP007_G6_L006_P055_S18_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

54602264

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1887PDIV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples