IGVFFI0454OPJD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9516JWYR(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP002_G5_P051_L006_I1

md5sum

d281403a1e60945c264a51c97a14b64d

Content MD5sum

081c229ba4b2761ad9cb0157f5ea429f

File Size

486 MB

Submitted File Name

Multiome_ATAC_RP002_G5_L011_P051_S33_L006_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

68067551

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5494QQKW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples