IGVFFI0448MHBM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1691KPWU(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X041_G1_P042_L004_R2

md5sum

dd51bd6ff80b8ce1e39355078a9edc0e

Content MD5sum

4894d98fde22f619d60f1c3aa2a69fff

File Size

3.5 GB

Submitted File Name

Multiome_RNA_X041_G1_L001_P042_S11_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

222YMLLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

81863410

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1990PUGQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples