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IGVFFI0446XXIA

released
validated
File Set
IGVFDS4464LQXA(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 173
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_173_R1
bradley-bernstein:SS-LS_2120_R1
buenrostro-bernstein:SS-LS_173_R1
buenrostro-bernstein:SS-LS_2120_R1
md5sum
65b3932ae6a7af9769b7e41a9720a229
Content MD5sum
9ce7e2f7c0a44a39861ce21bab8e9733
File Size
668 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-202_L2_SS-PKR-131_2022-APRIL-R1-PLATE2-ENTIRE-PLATE_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
173
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
20616294

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)

Files Derived From This File

2 items
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
2.2 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
924 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI0446XXIA, IGVFFI8770YVGL
Jason Buenrostro, Broad
1.2 KB
validated