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INDEXED
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SequenceFile
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IGVFFI0438JEHZ
IGVFFI0438JEHZ
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS7168ZWPA
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X050_G3_P066_L006_I1
md5sum
68f273007d6aa4bfdf77405c89e6a62d
Content MD5sum
3ec6d8b84b354909b63f4ae30de4736b
File Size
373 MB
Submitted File Name
Multiome_RNA_X050_G3_L003_P066_S33_L006_I1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
2257GYLT3
Lane
6
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
10
Read Count
55964866
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3258TKYR
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples