IGVFFI0416XXPI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1843SBYD(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X056_G1_P073_L003_R1

md5sum

5899228b0695683e5ba9df29ec9ca5ad

Content MD5sum

ff961f0437af64fbc9fe38fbdb247a4c

File Size

11 GB

Submitted File Name

Multiome_ATAC_X056_G1_L001_P073_S9_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

148180543

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3628YHAV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 8 more samples