IGVFFI0404MFQV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5146PTIC(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP011_G7_P059_L007_R3

md5sum

2627c71b382d675380be20cbe143e49e

Content MD5sum

e35d5d60f1806d41c02be2850eed1888

File Size

1.9 GB

Submitted File Name

Multiome_ATAC_RP011_G7_L007_P059_S79_L007_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

65151748

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5471WRIH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples