IGVFFI0375UGMQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9257OPTG(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP019_G3_P063_L005_R1

md5sum

e5b55315ad8a90e5bc4914cc96dabf99

Content MD5sum

2ba85d35b7ad27817b302bc84ba7ab5f

File Size

2.0 GB

Submitted File Name

Multiome_ATAC_RP019_G3_L003_P063_S37_L005_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

63430826

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3886NYMH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples