IGVFFI0373CQKN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1841XXQV(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X044_G5_P045_L001_I1

md5sum

c317e883b7a7a848e3f8c3355f3e3a00

Content MD5sum

cf0d1b1c3d22720069cd2463e82bbfce

File Size

1.9 GB

Submitted File Name

Multiome_ATAC_X044_G5_L005_P045_S1_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

261393301

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1837EZTB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples