IGVFFI0370MNMQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2240MOEK(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP010_G7_P059_L008_R2

md5sum

4f34aad17bfe3f1d677a7a53d0842f13

Content MD5sum

5889f1fec8cf906ca73772cf39affcdf

File Size

1.3 GB

Submitted File Name

Multiome_ATAC_RP010_G7_L007_P059_S71_L008_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

77615281

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9956HBLE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples