IGVFFI0365IPXT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6850KERY(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP007_G7_P056_L008_R1

md5sum

4615d0dd4570ac8f2459d33dc62cd6d3

Content MD5sum

4f796dfe5569ec2dac5dba58277a09f2

File Size

921 MB

Submitted File Name

Multiome_RNA_RP007_G7_L007_P056_S94_L008_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JHVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

46693548

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4219SNVI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples