IGVFFI0355KHZB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3028DRCS(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X012_G5_P011_L003_I1

md5sum

262042c1957189be169020087ea9cbdb

Content MD5sum

5d52920c1351f59ca96ad9ab36e4763e

File Size

1.3 GB

Submitted File Name

Multiome_ATAC_X012_G5_L005_P011_S15_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

162155362

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0906OTCP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) putamen tissue; Homo sapiens (male, 72 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples