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IGVFFI0339ZACP

released
validated
File Set
IGVFDS2684OSWL(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp1_rna_10x2_NGS2_r1
md5sum
8fec9ee7d1c21fa2829d2c19be312436
Content MD5sum
c02f9fcab4c8f6102b26a46fa8e3ea57
File Size
11 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF1_McGinnis/GEX/FASTQ/GEX_2_S42_L008_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
2257H3LT3
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
562414534

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
204 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI0339ZACP, IGVFFI0877NKND, IGVFFI5567DOCL, IGVFFI2202GIPC
Ansuman Satpathy, Stanford
1.4 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford