IGVFFI0339YEEM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3772GBWA(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X017_G3_P016_L004_R1

md5sum

5f9a53c5cfb1fe393689eb711f8be707

Content MD5sum

c38c0eb3d2f6c0d7e667e04c784c86ed

File Size

4.7 GB

Submitted File Name

Multiome_RNA_X017_G3_L003_P016_S11_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

230689675

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5043ZULM

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples