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IGVFFI0325JFHX

released
validated
File Set
IGVFDS5515DQMD(lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp5_multi_10x2_NGS1_i2
md5sum
def80c0d3a38f78b0f57916403366783
Content MD5sum
4db58215362925fea9c62c1dcb1dfbd2
File Size
216 MB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF5_McGinnis/MULTI/FASTQ/MULTI_2_S22_L005_I2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JJCLT3
Lane
5
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I2
Average Read Length
10
Read Count
39680110

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; ... and 6 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
479 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI2279JMLG, IGVFFI0325JFHX, IGVFFI3387DVAL, IGVFFI9711ZRTC
Ansuman Satpathy, Stanford
1.3 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford