IGVFFI0323ACLC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1273KOYU(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP025_G2_P069_L003_R1

md5sum

50620546d2dd8560018776ddbd528951

Content MD5sum

8968dc06b350c1b1eb215ae2220c6be3

File Size

20 GB

Submitted File Name

Multiome_ATAC_RP025_G2_L002_P069_S2_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

286600539

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0036UTPF

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 8 more samples