IGVFFI0322QOZD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6683OXVV(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X030_G8_P029_L003_R1

md5sum

bdcbca961f8b4c1f9f5e4e1a75e19cac

Content MD5sum

fd9c8e667659df9df306d4cdd428dcc1

File Size

9.6 GB

Submitted File Name

Multiome_ATAC_X030_G8_L008_P029_S36_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

182178235

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1890PIKY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 60 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples