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IGVFFI0308CWCN

released
validated
File Set
IGVFDS0282GEHF(gRNA sequencing for mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:auxiliary_files_CRUDO_TAPseq-Auxin0hrs-Rep1_S3_R1
md5sum
8a265cb98dd641efb73dbb887be3a8e2
Content MD5sum
b18155131304705bb36342eaeb4aa49c
File Size
174 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/221125_Cohesin_TAPseq_v1/221125_Cohesin_TAPseq_v1/outs/fastq_path/L361_S2_L003_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Illumina NextSeq 550
Sequencing Run
1
Lane
3
Illumina Read Type
R1
Average Read Length
28
Read Count
7041470

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI0308CWCN, IGVFFI6069TAYE, IGVFFI6529TUVF
Jesse Engreitz, Stanford
1.2 KB
validated

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford