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IGVFFI0305JWNM

released
validated
File Set
IGVFDS1261CJEE(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp5_atac_10x3_NGS4_r1
md5sum
1dc858f83c2c93b9075826b59c570143
Content MD5sum
ae0b75acd8b115008ee6641bfb5bdbf7
File Size
9.5 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF5_McGinnis/ATAC/FASTQ/ATAC_3_S9_L008_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
222YV7LT3
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
51
Read Count
317605028

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) H9 differentiated cell specimen induced to neuron for 6 days; Homo sapiens (female) H9 differentiated cell specimen induced to neuron for 6 days; ... and 6 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
5.9 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI0305JWNM, IGVFFI3665BFAV, IGVFFI7178QZPF, IGVFFI8175MFIR
Ansuman Satpathy, Stanford
1.4 KB
validated