IGVFFI0269PZHU

released

validated

File Set

IGVFDS9738NANI(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF2-BinA-PCR3_Rep1_S37

md5sum

dc0ab4e9385e2f0e903ccef31e0d43e5

Content MD5sum

78b398d98797811cf2b6b3ce2939ed07

File Size

42 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF2-BinA-PCR3-Rep1_S37_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

AAGACACT:TGCG

Average Read Length

Read Count

2149992

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM6871QVFB

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin A for 0-10% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library