Home

IGVFFI0264EEBL

released
validated
File Set
IGVFDS8391OPLO(lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp6_multi_10x4_NGS3_r1
md5sum
d38b6b44f3216a2e07bc7e8ab784f27a
Content MD5sum
02894ffed8f502e2ff936fcb72fc7383
File Size
580 MB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF6_McGinnis/MULTI/FASTQ/MULTI_4_S8_L003_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JHMLT3
Lane
3
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
29107554

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days; Homo sapiens (male) H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days; ... and 6 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
526 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI0264EEBL, IGVFFI0293UODZ, IGVFFI5009AAHP, IGVFFI1347WEVL
Ansuman Satpathy, Stanford
1.3 KB
validated