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INDEXED
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SequenceFile
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IGVFFI0239TWOF
IGVFFI0239TWOF
released
validated
Json view
File Set
IGVFDS5941UNYO
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R3 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp9_atac_10x1_NGS1_r3
md5sum
ac0cabe22b7518e432be5e24948f3a3d
Content MD5sum
6c6c675bcd09de04a20aa7cd732c7204
File Size
11 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230707_IGVF9_McGinnis/ATAC/FASTQ/ATAC_1CMAS_IGVF9_A_S21_L005_R3_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JGVLT3
Lane
5
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R3
Average Read Length
50
Read Count
366733065
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9678IFHW
MultiplexedSample
B cell
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI6893BJEL
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.3 GB
validation exempted
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI9315DIBJ
yaml
seqspec
seqspec of IGVFFI0239TWOF, IGVFFI8765ADYG, IGVFFI4081VDFX, IGVFFI4771BNJQ
Ansuman Satpathy, Stanford
1.4 KB
validated