IGVFFI0232ROEI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2421OHEM(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X007_G2_P005_L001_R3

md5sum

2dc6c66b8f37ebf7019c1f986145721b

Content MD5sum

1bc215ed21b2ecbd031329cd15b9a33b

File Size

17 GB

Submitted File Name

Multiome_ATAC_X007_G2_L002_P005_S2_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5THNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

314262989

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1022ULLW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 81 years) putamen tissue; Homo sapiens (male, 90 or above years) cerebellar cortex tissue; ... and 10 more samples