IGVFFI0219DBGV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5283BQYM(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X047_G3_P047_L003_R3

md5sum

d07f1c6790028d197f4f2f3e0746da46

Content MD5sum

0ed44a8d9c846c06b7a07799f39e4f05

File Size

8.2 GB

Submitted File Name

Multiome_ATAC_X047_G3_L003_P047_S23_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

260188820

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0045HDEA

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples