IGVFFI0216UNBO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9743TYOT(CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus)

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:Jurkat_Stim-IL2RA_prom-BioRep2-FFRep1-BinB-PCRRep4_R2

md5sum

7cb4f0fbc0772b2467cd95bb3722901a

Content MD5sum

fc3ee5ed8fd88559ef6fca11c7f401e5

File Size

6.8 MB

Submitted File Name

Jurkat_Stim-IL2RA_prom-BioRep2-FFRep1-PCRRep4-BinB_S86_R2_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Illumina Read Type

Index

AAGGATGT:TTGT

Average Read Length

150

Read Count

212317

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM1469NQHM

InVitroSystem

Jurkat

Jurkat cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of IL2RA) treated with 100 ng/mL phorbol 13-acetate 12-myristate for 24 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 24 hours, modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library