IGVFFI0215XIBW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3955MWJB(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X033_G5_P034_L002_R1

md5sum

fcd807f92475477770e01fd5f4c0827b

Content MD5sum

18acfce04d86621060eccf20d00a6bd1

File Size

12 GB

Submitted File Name

Multiome_RNA_X033_G5_L005_P034_S21_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

101

Read Count

185584512

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1587HABQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue; ... and 10 more samples