IGVFFI0211VTAV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6183YJRV(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP001_G4_P051_L005_R3

md5sum

457abcaab3993652ddf8f0ce985d4a31

Content MD5sum

a5584d38e3cd80da70ec464c2c82b5e8

File Size

2.1 GB

Submitted File Name

Multiome_ATAC_RP001_G4_L004_P051_S24_L005_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

72052806

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7329LEXT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples