IGVFFI0203KFTZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3830MHQW(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X040_G6_P041_L004_R1

md5sum

190b9ab080f0127377b7408b0b0bf07c

Content MD5sum

cf59657b4d7ca2441d4761d3b762fd80

File Size

1.5 GB

Submitted File Name

Multiome_ATAC_X040_G6_L006_P041_S8_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

46746729

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9187MAHV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples