IGVFFI0190HPAT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4522DBCU(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X012_G3_P009_L001_R2

md5sum

d455aad43fdc3042ccd901f1967cef80

Content MD5sum

d39c5ee414938e9fe5dd3f59ce2b0f69

File Size

3.2 GB

Submitted File Name

Multiome_ATAC_X012_G3_L003_P009_S13_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

176816253

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4418HKGN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) putamen tissue; Homo sapiens (male, 72 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples